Detailed information of SNP:
|
SNP ID:
sf1205909305(Gbrowse)
Chromosome: chr12 Position: 5909305 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 53.74% | 46.26% |
| All Indica | 769 | 51.11% | 48.89% |
| All Japonica | 476 | 54.83% | 45.17% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 361 | 33.52% | 66.48% |
| Indica II | 203 | 73.40% | 26.60% |
| Indica Intermediate | 205 | 60.00% | 40.00% |
| Temperate Japonica | 317 | 48.90% | 51.10% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 65 | 44.62% | 55.38% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205909305 | A->T | INTERGENIC | None |