Detailed information of SNP:
|
SNP ID:
sf1205949467(Gbrowse)
Chromosome: chr12 Position: 5949467 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 82.92% | 17.08% |
| All Indica | 774 | 93.41% | 6.59% |
| All Japonica | 471 | 64.54% | 35.46% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 367 | 95.91% | 4.09% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 204 | 90.20% | 9.80% |
| Temperate Japonica | 315 | 61.59% | 38.41% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 64 | 56.25% | 43.75% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205949467 | T->C | LOC_Os12g11030(LOC_Os12g11030.1) | Non-Synonymous SNP |