Detailed information of SNP:
|
SNP ID:
sf1205974351(Gbrowse)
Chromosome: chr12 Position: 5974351 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 95.70% | 4.30% |
| All Indica | 778 | 92.42% | 7.58% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 363 | 87.88% | 12.12% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205974351 | G->T | LOC_Os12g11080(LOC_Os12g11080.1) | Non-Synonymous SNP |