Detailed information of SNP:
|
SNP ID:
sf1205987859(Gbrowse)
Chromosome: chr12 Position: 5987859 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 86.14% | 13.86% |
| All Indica | 756 | 77.91% | 22.09% |
| All Japonica | 491 | 98.37% | 1.63% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 353 | 73.09% | 26.91% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 197 | 65.99% | 34.01% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1205987859 | C->A | INTERGENIC | None |