Detailed information of SNP:
|
SNP ID:
sf1206144842(Gbrowse)
Chromosome: chr12 Position: 6144842 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 88.95% | 11.05% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 493 | 81.54% | 18.46% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 333 | 79.88% | 20.12% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206144842 | C->A | INTERGENIC | None |