Detailed information of SNP:
|
SNP ID:
sf1206158301(Gbrowse)
Chromosome: chr12 Position: 6158301 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 90.35% | 9.65% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206158301 | A->G | LOC_Os12g11410(LOC_Os12g11410.1) | INTRON |