Detailed information of SNP:
|
SNP ID:
sf1206161815(Gbrowse)
Chromosome: chr12 Position: 6161815 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 81.63% | 18.37% |
| All Indica | 798 | 79.82% | 20.18% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 374 | 73.26% | 26.74% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 334 | 89.22% | 10.78% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206161815 | T->C | INTERGENIC | None |