Detailed information of SNP:
|
SNP ID:
sf1206181432(Gbrowse)
Chromosome: chr12 Position: 6181432 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 97.67% | 2.33% |
| All Indica | 796 | 97.61% | 2.39% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206181432 | G->A | INTERGENIC | None |