Detailed information of SNP:
|
SNP ID:
sf1206185270(Gbrowse)
Chromosome: chr12 Position: 6185270 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 95.93% | 4.07% |
| All Indica | 792 | 99.49% | 0.51% |
| All Japonica | 493 | 92.09% | 7.91% |
| Aus | 61 | 80.33% | 19.67% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206185270 | C->T | INTERGENIC | None |