Detailed information of SNP:



SNP ID: sf1206185943(Gbrowse)

Chromosome: chr12

Position: 6185943
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1402 91.87% 8.13%
All Indica786 90.20% 9.80%
All Japonica493 95.74% 4.26%
Aus67 85.07% 14.93%
Indica I370 87.57% 12.43%
Indica II210 92.38% 7.62%
Indica Intermediate206 92.72% 7.28%
Temperate Japonica334 98.80% 1.20%
Tropical Japonica92 83.70% 16.30%
Japonica Intermediate67 97.01% 2.99%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1206185943 C->T INTERGENIC None