Detailed information of SNP:
|
SNP ID:
sf1206185943(Gbrowse)
Chromosome: chr12 Position: 6185943 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 91.87% | 8.13% |
| All Indica | 786 | 90.20% | 9.80% |
| All Japonica | 493 | 95.74% | 4.26% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 370 | 87.57% | 12.43% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206185943 | C->T | INTERGENIC | None |