Detailed information of SNP:
|
SNP ID:
sf1206194675(Gbrowse)
Chromosome: chr12 Position: 6194675 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1290 | 70.70% | 29.30% |
| All Indica | 707 | 58.27% | 41.73% |
| All Japonica | 479 | 91.65% | 8.35% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 317 | 90.22% | 9.78% |
| Indica II | 203 | 14.29% | 85.71% |
| Indica Intermediate | 187 | 51.87% | 48.13% |
| Temperate Japonica | 321 | 89.41% | 10.59% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 4 | 0.00% | 100.00% |
| Intermediate | 34 | 55.88% | 44.12% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206194675 | G->A | INTERGENIC | None |