Detailed information of SNP:
|
SNP ID:
sf1206196319(Gbrowse)
Chromosome: chr12 Position: 6196319 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 93.23% | 6.77% |
| All Indica | 774 | 98.19% | 1.81% |
| All Japonica | 477 | 84.49% | 15.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 97.46% | 2.54% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 319 | 89.03% | 10.97% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206196319 | A->G | INTERGENIC | None |