Detailed information of SNP:
|
SNP ID:
sf1206196564(Gbrowse)
Chromosome: chr12 Position: 6196564 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 77.87% | 22.13% |
| All Indica | 798 | 66.79% | 33.21% |
| All Japonica | 479 | 93.11% | 6.89% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 20.19% | 79.81% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 328 | 94.51% | 5.49% |
| Tropical Japonica | 87 | 88.51% | 11.49% |
| Japonica Intermediate | 64 | 92.19% | 7.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206196564 | G->A | LOC_Os12g11470(LOC_Os12g11470.1) | Non-Synonymous SNP |