Detailed information of SNP:
|
SNP ID:
sf1206201507(Gbrowse)
Chromosome: chr12 Position: 6201507 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 80.10% | 19.90% |
| All Indica | 796 | 67.59% | 32.41% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 209 | 66.51% | 33.49% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206201507 | G->A | INTERGENIC | None |