Detailed information of SNP:
|
SNP ID:
sf1206202689(Gbrowse)
Chromosome: chr12 Position: 6202689 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 87.73% | 12.27% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206202689 | C->A | LOC_Os12g11490(LOC_Os12g11490.1) | INTRON |