Detailed information of SNP:
|
SNP ID:
sf1206246407(Gbrowse)
Chromosome: chr12 Position: 6246407 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 95.81% | 4.19% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 485 | 89.69% | 10.31% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 88.45% | 11.55% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206246407 | T->C | INTERGENIC | None |