Detailed information of SNP:
|
SNP ID:
sf1206248203(Gbrowse)
Chromosome: chr12 Position: 6248203 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.70% | 21.30% |
| All Indica | 799 | 68.21% | 31.79% |
| All Japonica | 496 | 92.34% | 7.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 23.00% | 77.00% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206248203 | G->A | INTERGENIC | None |