Detailed information of SNP:
|
SNP ID:
sf1206252124(Gbrowse)
Chromosome: chr12 Position: 6252124 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 78.10% | 21.90% |
| All Indica | 798 | 68.80% | 31.20% |
| All Japonica | 490 | 89.39% | 10.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 24.06% | 75.94% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 331 | 86.71% | 13.29% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206252124 | G->A | INTERGENIC | None |