Detailed information of SNP:
|
SNP ID:
sf1206312307(Gbrowse)
Chromosome: chr12 Position: 6312307 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 78.52% | 21.48% |
| All Indica | 790 | 68.86% | 31.14% |
| All Japonica | 493 | 95.54% | 4.46% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 206 | 27.67% | 72.33% |
| Indica Intermediate | 209 | 61.24% | 38.76% |
| Temperate Japonica | 332 | 94.58% | 5.42% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206312307 | T->C | INTERGENIC | None |