Detailed information of SNP:
|
SNP ID:
sf1206312392(Gbrowse)
Chromosome: chr12 Position: 6312392 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 77.87% | 22.13% |
| All Indica | 797 | 66.37% | 33.63% |
| All Japonica | 482 | 98.34% | 1.66% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 21.70% | 78.30% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 320 | 98.75% | 1.25% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206312392 | A->T | INTERGENIC | None |