Detailed information of SNP:
|
SNP ID:
sf1206346950(Gbrowse)
Chromosome: chr12 Position: 6346950 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 62.89% | 37.11% |
| All Indica | 795 | 81.64% | 18.36% |
| All Japonica | 478 | 29.50% | 70.50% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 321 | 25.86% | 74.14% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 65 | 32.31% | 67.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206346950 | C->T | INTERGENIC | None |