Detailed information of SNP:
|
SNP ID:
sf1206348567(Gbrowse)
Chromosome: chr12 Position: 6348567 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 57.74% | 42.26% |
| All Indica | 755 | 31.26% | 68.74% |
| All Japonica | 481 | 97.09% | 2.91% |
| Aus | 55 | 87.27% | 12.73% |
| Indica I | 373 | 26.27% | 73.73% |
| Indica II | 193 | 36.27% | 63.73% |
| Indica Intermediate | 189 | 35.98% | 64.02% |
| Temperate Japonica | 328 | 98.17% | 1.83% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206348567 | G->A | LOC_Os12g11700(LOC_Os12g11700.1) | INTRON |