Detailed information of SNP:
|
SNP ID:
sf1206351133(Gbrowse)
Chromosome: chr12 Position: 6351133 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 64.49% | 35.51% |
| All Indica | 732 | 43.03% | 56.97% |
| All Japonica | 487 | 96.51% | 3.49% |
| Aus | 60 | 78.33% | 21.67% |
| Indica I | 369 | 27.64% | 72.36% |
| Indica II | 172 | 68.60% | 31.40% |
| Indica Intermediate | 191 | 49.74% | 50.26% |
| Temperate Japonica | 330 | 98.18% | 1.82% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206351133 | G->T | INTERGENIC | None |