Detailed information of SNP:
|
SNP ID:
sf1206356533(Gbrowse)
Chromosome: chr12 Position: 6356533 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 57.90% | 42.10% |
| All Indica | 792 | 89.27% | 10.73% |
| All Japonica | 496 | 7.26% | 92.74% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 208 | 81.73% | 18.27% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206356533 | G->A | LOC_Os12g11720(LOC_Os12g11720.1) | Non-Synonymous SNP |