Detailed information of SNP:
|
SNP ID:
sf1206391551(Gbrowse)
Chromosome: chr12 Position: 6391551 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 78.26% | 21.74% |
| All Indica | 797 | 92.10% | 7.90% |
| All Japonica | 484 | 53.72% | 46.28% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 328 | 46.04% | 53.96% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206391551 | C->T | INTERGENIC | None |