Detailed information of SNP:
|
SNP ID:
sf1206393155(Gbrowse)
Chromosome: chr12 Position: 6393155 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 74.08% | 25.92% |
| All Indica | 788 | 92.51% | 7.49% |
| All Japonica | 478 | 41.84% | 58.16% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 322 | 35.71% | 64.29% |
| Tropical Japonica | 90 | 63.33% | 36.67% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206393155 | G->A | INTERGENIC | None |