Detailed information of SNP:
|
SNP ID:
sf1206393258(Gbrowse)
Chromosome: chr12 Position: 6393258 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 74.68% | 25.32% |
| All Indica | 793 | 91.68% | 8.32% |
| All Japonica | 476 | 44.96% | 55.04% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 323 | 40.25% | 59.75% |
| Tropical Japonica | 88 | 63.64% | 36.36% |
| Japonica Intermediate | 65 | 43.08% | 56.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206393258 | G->T | INTERGENIC | None |