Detailed information of SNP:
|
SNP ID:
sf1206395335(Gbrowse)
Chromosome: chr12 Position: 6395335 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 72.72% | 27.28% |
| All Indica | 792 | 90.91% | 9.09% |
| All Japonica | 490 | 41.43% | 58.57% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 329 | 37.99% | 62.01% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206395335 | A->G | INTERGENIC | None |