Detailed information of SNP:
|
SNP ID:
sf1206396660(Gbrowse)
Chromosome: chr12 Position: 6396660 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 71.19% | 28.81% |
| All Indica | 793 | 91.05% | 8.95% |
| All Japonica | 492 | 36.99% | 63.01% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 331 | 33.23% | 66.77% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206396660 | G->A | INTERGENIC | None |