Detailed information of SNP:
|
SNP ID:
sf1206397244(Gbrowse)
Chromosome: chr12 Position: 6397244 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 73.51% | 26.49% |
| All Indica | 789 | 92.27% | 7.73% |
| All Japonica | 484 | 40.91% | 59.09% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 324 | 37.65% | 62.35% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206397244 | G->A | INTERGENIC | None |