Detailed information of SNP:
|
SNP ID:
sf1206397755(Gbrowse)
Chromosome: chr12 Position: 6397755 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 90.01% | 9.99% |
| All Indica | 793 | 96.47% | 3.53% |
| All Japonica | 496 | 79.03% | 20.97% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206397755 | T->A | INTERGENIC | None |