Detailed information of SNP:
|
SNP ID:
sf1206427899(Gbrowse)
Chromosome: chr12 Position: 6427899 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 80.56% | 19.44% |
| All Indica | 786 | 92.49% | 7.51% |
| All Japonica | 489 | 59.51% | 40.49% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 210 | 84.76% | 15.24% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 330 | 54.55% | 45.45% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206427899 | T->A | INTERGENIC | None |