Detailed information of SNP:
|
SNP ID:
sf1206431983(Gbrowse)
Chromosome: chr12 Position: 6431983 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 61.74% | 38.26% |
| All Indica | 792 | 83.21% | 16.79% |
| All Japonica | 492 | 25.00% | 75.00% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 372 | 93.01% | 6.99% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 208 | 83.65% | 16.35% |
| Temperate Japonica | 333 | 24.32% | 75.68% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 66 | 22.73% | 77.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206431983 | G->A | INTERGENIC | None |