Detailed information of SNP:
|
SNP ID:
sf1206432336(Gbrowse)
Chromosome: chr12 Position: 6432336 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 64.20% | 35.80% |
| All Indica | 793 | 84.87% | 15.13% |
| All Japonica | 491 | 27.90% | 72.10% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 207 | 83.57% | 16.43% |
| Temperate Japonica | 329 | 27.96% | 72.04% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206432336 | T->G | INTERGENIC | None |