Detailed information of SNP:
|
SNP ID:
sf1206432360(Gbrowse)
Chromosome: chr12 Position: 6432360 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 67.38% | 32.62% |
| All Indica | 790 | 88.73% | 11.27% |
| All Japonica | 490 | 30.41% | 69.59% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 207 | 76.81% | 23.19% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 329 | 29.79% | 70.21% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206432360 | C->T | INTERGENIC | None |