Detailed information of SNP:
|
SNP ID:
sf1206433601(Gbrowse)
Chromosome: chr12 Position: 6433601 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 67.47% | 32.53% |
| All Indica | 794 | 88.41% | 11.59% |
| All Japonica | 493 | 31.03% | 68.97% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 209 | 76.56% | 23.44% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 332 | 31.02% | 68.98% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206433601 | C->A | INTERGENIC | None |