Detailed information of SNP:
|
SNP ID:
sf1206434929(Gbrowse)
Chromosome: chr12 Position: 6434929 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 69.37% | 30.63% |
| All Indica | 794 | 88.79% | 11.21% |
| All Japonica | 492 | 35.57% | 64.43% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 332 | 32.83% | 67.17% |
| Tropical Japonica | 92 | 48.91% | 51.09% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206434929 | C->T | INTERGENIC | None |