Detailed information of SNP:
|
SNP ID:
sf1206441478(Gbrowse)
Chromosome: chr12 Position: 6441478 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 68.86% | 31.14% |
| All Indica | 792 | 88.51% | 11.49% |
| All Japonica | 483 | 33.54% | 66.46% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 209 | 76.08% | 23.92% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 329 | 34.04% | 65.96% |
| Tropical Japonica | 89 | 33.71% | 66.29% |
| Japonica Intermediate | 65 | 30.77% | 69.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206441478 | C->T | INTERGENIC | None |