Detailed information of SNP:
|
SNP ID:
sf1206476634(Gbrowse)
Chromosome: chr12 Position: 6476634 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 91.15% | 8.85% |
| All Indica | 766 | 92.69% | 7.31% |
| All Japonica | 492 | 90.24% | 9.76% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 359 | 91.64% | 8.36% |
| Indica II | 203 | 93.10% | 6.90% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206476634 | T->C | INTERGENIC | None |