Detailed information of SNP:
|
SNP ID:
sf1206481469(Gbrowse)
Chromosome: chr12 Position: 6481469 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 97.02% | 2.98% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 487 | 93.22% | 6.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 93.35% | 6.65% |
| Tropical Japonica | 88 | 87.50% | 12.50% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206481469 | T->G | LOC_Os12g11900(LOC_Os12g11900.1) | Non-Synonymous SNP |