Detailed information of SNP:
|
SNP ID:
sf1206531794(Gbrowse)
Chromosome: chr12 Position: 6531794 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 95.25% | 4.75% |
| All Indica | 792 | 93.94% | 6.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 370 | 88.65% | 11.35% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206531794 | G->A | INTERGENIC | None |