Detailed information of SNP:
|
SNP ID:
sf1206603540(Gbrowse)
Chromosome: chr12 Position: 6603540 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 57.05% | 42.95% |
| All Indica | 743 | 28.26% | 71.74% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 346 | 34.97% | 65.03% |
| Indica II | 200 | 18.00% | 82.00% |
| Indica Intermediate | 197 | 26.90% | 73.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206603540 | A->T | LOC_Os12g12050(LOC_Os12g12050.1) | Synonymous |