Detailed information of SNP:
|
SNP ID:
sf1206604208(Gbrowse)
Chromosome: chr12 Position: 6604208 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 96.30% | 3.70% |
| All Indica | 762 | 94.62% | 5.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 356 | 92.98% | 7.02% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 198 | 93.43% | 6.57% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206604208 | C->T | LOC_Os12g12050(LOC_Os12g12050.1) | Non-Synonymous SNP |