Detailed information of SNP:
|
SNP ID:
sf1206605812(Gbrowse)
Chromosome: chr12 Position: 6605812 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 96.96% | 3.04% |
| All Indica | 772 | 96.37% | 3.63% |
| All Japonica | 488 | 98.36% | 1.64% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 98.11% | 1.89% |
| Indica II | 200 | 93.00% | 7.00% |
| Indica Intermediate | 202 | 96.53% | 3.47% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206605812 | C->T | INTERGENIC | None |