Detailed information of SNP:
|
SNP ID:
sf1206629346(Gbrowse)
Chromosome: chr12 Position: 6629346 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 61.97% | 38.03% |
| All Indica | 742 | 90.16% | 9.84% |
| All Japonica | 496 | 20.56% | 79.44% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 347 | 94.24% | 5.76% |
| Indica II | 199 | 84.92% | 15.08% |
| Indica Intermediate | 196 | 88.27% | 11.73% |
| Temperate Japonica | 335 | 24.18% | 75.82% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206629346 | C->T | INTERGENIC | None |