Detailed information of SNP:
|
SNP ID:
sf1206657017(Gbrowse)
Chromosome: chr12 Position: 6657017 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.88% | 39.12% |
| All Indica | 792 | 90.28% | 9.72% |
| All Japonica | 496 | 19.35% | 80.65% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 334 | 19.16% | 80.84% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206657017 | C->T | INTERGENIC | None |