Detailed information of SNP:
|
SNP ID:
sf1206686924(Gbrowse)
Chromosome: chr12 Position: 6686924 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.51% | 42.49% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206686924 | T->A | INTERGENIC | None |