Detailed information of SNP:
|
SNP ID:
sf1206747877(Gbrowse)
Chromosome: chr12 Position: 6747877 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.69% | 48.31% |
| All Indica | 798 | 20.68% | 79.32% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 29.07% | 70.93% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 210 | 20.95% | 79.05% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206747877 | A->G | INTERGENIC | None |