Detailed information of SNP:
|
SNP ID:
sf1206752372(Gbrowse)
Chromosome: chr12 Position: 6752372 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.83% | 37.17% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206752372 | G->T | INTERGENIC | None |