Detailed information of SNP:
|
SNP ID:
sf1206759371(Gbrowse)
Chromosome: chr12 Position: 6759371 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 80.23% | 19.77% |
| All Indica | 796 | 69.60% | 30.40% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 20.75% | 79.25% |
| Indica Intermediate | 209 | 68.90% | 31.10% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206759371 | G->C | LOC_Os12g12300(LOC_Os12g12300.1) | Non-Synonymous SNP |